NRD Nicotiana Resistance database  
         
  A total of 1,958 Short Tandem Repeat (STR) loci have been detected by the perl scripts,we make the principles that find the dimer, trimer,tetramer, pentamer, hexamer and heptamer in at least 12bps.      
         
  You can search these STR locis from the page and there also a SSR detect tools link at last.      
 
     
 
Pathogens:
     
 
ID
eg:gi|62043|emb|X68110.1|      
 
Motif
eg: caa      
 
Motif length
eg: 3      
       
 
     
 
An overview of the STRs in the pathogens genome
     
       
 
Pathogens
Sequence number
SSR number
Average
Feature element
Alfalfa mosaic virus(AMV)
12
29
2.42
ttttta tctgag
Beet Curly- top Virus(BCTV)
3
5
1.67
tactgg
Cucumber mosaic virus(CMV)
39
50
1.28
gt tg
Chilli veinal mottle virus(CVMV)
6
35
5.83
attcgcg
Potato virus X(PVX)
19
56
2.95
cttgtg
Potato virus Y(PVY)
110
557
5.06
ttattag
Tomato Aspermy Virus(TAV)
8
31
3.88
tg
Tomato black ring nepovirus(TBRV)
6
14
2.33
gatttt
Tobacco bushy top virus(TBTV)
6
12
2
gaagtg
Tobacco etch virus(TEV)
6
14
2.33
aaagca
Tobacco leaf curl virus(TLCV)
6
11
1.83
tgttca gtaaatt aag ttttgaa  aaattca 
Tobacco mosaic virus(TMV)
67
398
5.94
caa
Tobacco necrosis virus (TNV)
7
17
2.43
aac
Tomato ringspot Nepovirus (TomRSV)
5
19
3.8
tgtc
Tobacco Streak Virus(TSV)
18
23
1.28
ta
Tobacco Rattle Virus(TRV)
7
15
2.14
tac
Tomato spotted wilt virus(TSWV)
139
614
4.42
aaaaca 
Tobacco Vein-ba nding Mosaic Virus(TVNMV)
13
54
4.15
aggaac aggaac
Tobacco vein distorting virus(TVDV)
2
4
2
acctca taagga