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      A platform of genetics and genomics

                             analysis and application in Nicotiana

 

Simple Sequence Repeats (SSR) is an important molecular marker in the genetic breeding. 3,963,119 SSR markers have been detected by the MISA software and 434,690 SSR primers have been developed by the primer3 for the Nicotiana genetics breeding.

 


 

◇ Search SSR by Gene ID, or SSR type .

 

Nicotiana Species: *
Choose the file type:
Gene ID: eg:Niben101Scf00015g04025.1
SSR Type (motif): eg:(ACC)
SSR Type (number): eg:6

 

                         

 


SSR in Nicotiana

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Species SSR Numbers  Total 
genome gene cds exon intron
Nicotiana benthamiana        492,540        61,568         2,428         2,412        59,134           618,082
Nicotiana otophora        358,420  -   -   -   -            358,420
Nicotiana sylvestris        420,177        63,159         2,333         2,323        60,821           548,813
Nicotiana tabacum BX        594,364        47,536         3,602  -   -            645,502
Nicotiana tabacum K326        620,818        45,437         3,644  -   -            669,899
Nicotiana tabacum TN90        637,331        44,660         3,842  -   -            685,833
Nicotiana tomentosiformis        306,151        63,893         2,636         2,613        61,277           436,570
Total     3,429,801      326,253       18,485         7,348      181,232        3,963,119
 

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