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      A platform of genetics and genomics

                             analysis and application in Nicotiana

 

Simple Sequence Repeats (SSR) is an important molecular marker in the genetic breeding. 3,429,801 genome-SSR markers have been detected by the MISA software and 434,690 SSR primers have been developed by the primer3 for the Nicotiana genetics breeding.

 


 

◇ Search SSR by Gene ID, or SSR type .

 

Nicotiana Species: *
Choose the file type:
Gene ID: eg:Niben101Scf00015g04025.1
SSR Type (motif): eg:(ACC)
SSR Type (number): eg:6

 

                         

 


SSR in Nicotiana

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Species SSR Numbers  Total 
genome gene cds exon intron
Nicotiana benthamiana        492,540        61,568         2,428         2,412        59,134           618,082
Nicotiana otophora        358,420  -   -   -   -            358,420
Nicotiana sylvestris        420,177        63,159         2,333         2,323        60,821           548,813
Nicotiana tabacum BX        594,364        47,536         3,602  -   -            645,502
Nicotiana tabacum K326        620,818        45,437         3,644  -   -            669,899
Nicotiana tabacum TN90        637,331        44,660         3,842  -   -            685,833
Nicotiana tomentosiformis        306,151        63,893         2,636         2,613        61,277           436,570
Total     3,429,801      326,253       18,485         7,348      181,232        3,963,119
 

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