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      A platform of genetics and genomics

                             analysis and application in Nicotiana

 

 

 

Bio-Tools Description
Blast:

 

BLAST is an important tool to find regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance.

 

SSR Detect:

 

MISA is a practical tool to detect the SSR,we integrate the software to a html web in the following.we get the software from the website (http://pgrc.ipk-gatersleben.de/misa/) ,Dr Thomas Thief developed this software and his article published in the Theoretical and Applied Genetics(Thiel T, et al. 2003).

 

Cds-Protein:

 

A useful tool for the Nucleotide sequences to the Protein sequences.

 

Primer Design:

 

Primer3 is a free online tool to design and analyze primers for PCR and real time PCR experiments. Primer3 can also select single primers for sequencing reactions and can design oligonucelotide hybridization probes. The online tool constitutes some important features like primer detection, cloning, sequencing and Primer listing.

 

E-PCR:

 

E-PCR identifies sequence tagged sites(STSs)within DNA sequences. Using E-PCR, you can search for sub-sequences that closely match the PCR primers and have the correct order, orientation, and spacing.

 

 

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Please contact: Long Yang