The Species in this databse.

Latin Name Download Website version/Download Date
Oryza sativa L. ssp. indica http://rice.genomics.org.cn/rice/link/download.jsp 2014/4/3
Amborella trichopoda http://www.amborella.org/ v1.0
Malus x domestica http://genomics.research.iasma.it/ 2014/4/7
Arabidopsis lyrata ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Alyrata/ phytozome v9.0
Arabidopsis thaliana ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.1/Alyrata/ phytozome v9.1
Phyllostachys heterocycla http://202.127.18.221/bamboo/down.php v1.0
Musa acuminata http://banana-genome.cirad.fr/content/download-dh-pahang v1
Hordeum vulgare L. ftp://ftpmips.helmholtz-muenchen.de/plants/barley/public_data/ assemble_5
Brachypodium distachyon ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Bdistachyon/ phytozome v9.0
Theobroma cacao ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Tcacao/ phytozome v9.0
Cannabis sativa finola1 http://genome.ccbr.utoronto.ca/downloads.html 2014/4/5
Cannabis sativa cansat3 http://genome.ccbr.utoronto.ca/downloads.html 2014/4/6
Dianthus caryophyllus L. ftp://ftp.kazusa.or.jp/pub/carnation/ Download version: r1.0
Ricinus communis ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Rcommunis/ phytozome v9.0
Cicer arietinum http://cicar.comparative-legumes.org/ v1.0
Chlamydomonas reinhardtii  ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Creinhardtii/ v4.0
Gossypium raimondii http://cgp.genomics.org.cn/page/species/download.jsp 2014/4/3
Cucumis sativus L. ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Csativus/ phytozome v9.0
Phoenix dactylifera http://qatar-weill.cornell.edu/research/datepalmGenome/download.html version 3
Linum usitatissimum ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Lusitatissimum/ phytozome v9.0
Vitis vinifera http://www.genoscope.cns.fr/externe/Download/Projets/Projet_ML/data/8X/ 2013/11/6
Oryza sativa L. ssp. japonica http://rgp.dna.affrc.go.jp/ version: Build 5.0
Jatropha curcas L. ftp://ftp.kazusa.or.jp/pub/jatropha/ r 4.5
Actinidia chinensis http://bioinfo.bti.cornell.edu/cgi-bin/kiwi/download.cgi 2013/11/5
Lotus japonicus http://www.medicago.org/genome/ lotus r2.5
Zea mays http://ftp.maizesequence.org/current/ RefGen_v2
Elaeis guineensis http://genomsawit.mpob.gov.my/genomsawit/auth/index.php?track=29 v2.1
Elaeis oleifera http://genomsawit.mpob.gov.my/genomsawit/auth/index.php?track=30 v2.0
Medicago truncatula ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Mtruncatula/ phytozome v9.0
Cucumis melo L. https://melonomics.net/files/ v3.5
Setaria italica ftp://ftp.genomics.org.cn/pub/Foxtail_millet/ version 2
Utricularia ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Mguttatus_v1.1/ v1.1
Nicotiana benthamiana ftp://ftp.solgenomics.net/genomes/Nicotiana_benthamiana/ v0.4.4
Picea abies http://congenie.org/downloads v1.0
Oryza brachyantha http://ensembl.gramene.org/Oryza_brachyantha/Info/Index v1.4b
Carica papaya Linnaeus ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Cpapaya/ phytozome v9.0 
Prunus persica ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ppersica/ phytozome v9.0
Physcomitrella  ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ppatens_v1.6/ v1.6
Cajanus cajan http://www.icrisat.org/gt-bt/iipg/Genome_Manuscript.html 2014/4/3
Solanum tuberosum L. http://solanaceae.plantbiology.msu.edu/pgsc_download.shtml PGSC v4.03¬†
Prunus mume http://prunusmumegenome.bjfu.edu.cn/ v1.0
Populus trichocarpa  ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/ Ptrichocarpa v3.0
Phaseolus vulgaris Linn. ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Pvulgaris/ phytozomev9.0
Brassica rapa ftp://brassicadb.org/ v1.2
Selaginella moellendorffii ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Smoellendorffii/ phytozome v9.0
Sorghum bicolor ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Sbicolor_v1.4/ Sbicolor v1.4
Glycine max ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Gmax/ phytozome v9.0
Fragaria vesca ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Fvesca/ phytozome v9.0
Citrus sinensis http://citrus.hzau.edu.cn/orange/download/data.php 2014/4/5
Panicum virgatum ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/early_release/Pvirgatum_v1.1/ v1.1
Oryza sativa http://rice.genomics.org.cn/rice/link/download.jsp 2014/4/5
Thellungiella halophila ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Thalophila/ phytozome v9.0
Solanum lycopersicum ftp://ftpmips.helmholtz-muenchen.de/plants/tomato/ assembly v2.4 / annotation 2.3
Volvox carteri ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Vcarteri/ phytozome v9.0
Citrullus lanatus ftp://www.icugi.org/pub/genome/watermelon/97103/v1/ v1
Triticum urartu http://gigadb.org/dataset/100050 2014/4/5
Aegilops tauschii http://gigadb.org/dataset/view/id/100054/files_page/22 2014/4/5
Cucumis sativus var. hardwicki ftp://www.icugi.org/pub/reseq/cucumber/ or http://cmb.bnu.edu.cn/Cucumis_sativus_v20/resequence/ 2013/10/22
Capsicum annuum L Zunla-1 http://peppersequence.genomics.cn/page/species/download.jsp v2.0
Capsicum annuum var glabriusculum Chiltepin http://peppersequence.genomics.cn/page/species/download.jsp v2.0
     

The Stistics of the Crispr site.

species Latin name Cas9 site abundance(/MB) Cas9 site(no repeat) specific site abundance(/MB) Genome size(MB)
apple Malus domestica 70,080,275 81,489 36,876,465 26,463,807 30,772 860
grape Vitis vinifera L 35,767,960 75,780 25,355,476 22,597,817 47,877 472
cucumber Cucumis sativus Linn 11,760,813 59,700 11,338,058 11,110,019 56,396 197
pear Pyrus spp 39,848,459 80,178 23,899,531 18,359,874 36,941 497
eggplant Solanum melongena 61,766,186 76,349 42,221,361 37,109,638 45,871

809

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The distribution of the Crispr site on the Chromosome

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